Is there a different submission process for internal vs. external grant applications?

Yes, a grant application for an internal grant does not require IRB-HSR approval of the grant.  An example of this type of grant:  The UVA Center for Creative Research has obtained a one million dollar grant.  The UVA Center for Creative Research then accepts grant applications from UVA investigators and determines how the money will be distributed.  (Note that the IRB-HSR would still have to approve the protocol.)

An external grant application to the FDA or a non Common Rule Federal agency (e.g. Department of Justice)  does require approval from the IRB-HSR.